If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 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'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 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'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 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'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 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'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 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'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 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'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 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'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 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'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 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'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 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'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 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'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 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'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 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'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 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'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 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'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 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'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 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'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 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'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 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'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 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'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 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'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 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'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 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'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 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'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 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'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 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'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 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'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 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'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 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'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 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'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 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'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 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'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ), 'gf_id' => 'HOM05D000972', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000972' ), 'data_identifier' => 'HOM05D000972', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000972', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26770' => 'bna', 'A03p19950' => 'bna', 'A03p28830' => 'bna', 'A03p37110' => 'bna', 'A04p27670' => 'bna', 'A05p09670' => 'bna', 'A05p17140' => 'bna', 'A05p37810' => 'bna', 'A09p45670' => 'bna', 'A10p30290' => 'bna', 'Aa31LG10G7590' => 'aar', 'Aa31LG10G7600' => 'aar', 'Aa31LG3G4890' => 'aar', 'Aa31LG5G21290' => 'aar', 'Aa31LG9G11960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2032' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1034' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2331' => 'aag', 'Actinidia03520' => 'ach', 'Actinidia05408' => 'ach', 'Actinidia05409' => 'ach', 'Actinidia06413' => 'ach', 'Actinidia07690' => 'ach', 'Actinidia19519' => 'ach', 'Actinidia28838' => 'ach', 'Actinidia29393' => 'ach', 'Actinidia37303' => 'ach', 'Actinidia39568' => 'ach', 'Ah.01g003270' => 'amhyb', 'Ah.08g210450' => 'amhyb', 'Ah.15g090760' => 'amhyb', 'Ah.15g090770' => 'amhyb', 'AL3G23060' => 'aly', 'AL4G32260' => 'aly', 'AL5G33350' => 'aly', 'AL5G33360' => 'aly', 'AL6G16080' => 'aly', 'AL6G43750' => 'aly', 'Aqoxy2G01081' => 'aox', 'Aqoxy2G01083' => 'aox', 'Aqoxy3G01664' => 'aox', 'Aqoxy4G02745' => 'aox', 'Aqoxy5G00848' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081E2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AL5GLE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ARI0Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F5FKV3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N56SQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9SADQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZF8MBG' => 'arhy', 'AT2G36160' => 'ath', 'AT3G11510' => 'ath', 'AT3G52570' => 'ath', 'AT3G52580' => 'ath', 'AT4G10030' => 'ath', 'ATR0762G024' => 'atr', 'ATR0820G147' => 'atr', 'ATR0832G001' => 'atr', 'ATR1089G075' => 'atr', 'Atru.chr10.1254' => 'acertr', 'Atru.chr13.2464' => 'acertr', 'Atru.chr3.3193' => 'acertr', 'Atru.chr8.1460' => 'acertr', 'Atru.chr8.1465' => 'acertr', 'AUR62006212' => 'cqu', 'AUR62006213' => 'cqu', 'AUR62022408' => 'cqu', 'AUR62037006' => 'cqu', 'AUR62037007' => 'cqu', 'AUR62042166' => 'cqu', 'BcaB01g00356' => 'bca', 'BcaB01g02768' => 'bca', 'BcaB01g03857' => 'bca', 'BcaB02g07827' => 'bca', 'BcaB02g09380' => 'bca', 'BcaB04g18644' => 'bca', 'BcaB04g21132' => 'bca', 'BcaB06g25612' => 'bca', 'BcaB06g28919' => 'bca', 'BcaC01g04112' => 'bca', 'BcaC01g04694' => 'bca', 'BcaC01g05673' => 'bca', 'BcaC02g07631' => 'bca', 'BcaC02g09243' => 'bca', 'BcaC02g11720' => 'bca', 'BcaC03g16432' => 'bca', 'BcaC05g29360' => 'bca', 'BcaC06g32322' => 'bca', 'BcaC07g39626' => 'bca', 'BcaC07g39627' => 'bca', 'BcaC08g44237' => 'bca', 'BcaC09g48175' => 'bca', 'BolC3t14736H' => 'bol', 'BolC3t15797H' => 'bol', 'BolC3t16757H' => 'bol', 'BolC4t22845H' => 'bol', 'BolC4t27995H' => 'bol', 'BolC5t34310H' => 'bol', 'BolC6t36841H' => 'bol', 'BolC8t50402H' => 'bol', 'BolC9t59826H' => 'bol', 'BraA01t04180Z' => 'bra', 'BraA02t07681Z' => 'bra', 'BraA03t11246Z' => 'bra', 'BraA03t12081Z' => 'bra', 'BraA03t12873Z' => 'bra', 'BraA04t18262Z' => 'bra', 'BraA05t19923Z' => 'bra', 'BraA05t20616Z' => 'bra', 'BraA05t22576Z' => 'bra', 'BraA09t40028Z' => 'bra', 'BraA10t45067Z' => 'bra', 'C02p42570' => 'bna', 'C03p23380' => 'bna', 'C03p34850' => 'bna', 'C03p44970' => 'bna', 'C04p12010' => 'bna', 'C04p40400' => 'bna', 'C04p65200' => 'bna', 'C05p56440' => 'bna', 'C06p16410' => 'bna', 'C08p27870' => 'bna', 'C09p70700' => 'bna', 'CAN.G1069.8' => 'can', 'CAN.G1069.9' => 'can', 'CAN.G1199.5' => 'can', 'CAN.G1512.4' => 'can', 'CAN.G397.80' => 'can', 'CAN.G83.3' => 'can', 'CANSAT25G3161' => 'cansat', 'CANSAT64G0164' => 'cansat', 'CANSAT64G1571' => 'cansat', 'CARHR086060' => 'chi', 'CARHR130390' => 'chi', 'CARHR162360' => 'chi', 'CARHR162390' => 'chi', 'CARHR206830' => 'chi', 'CARHR261030' => 'chi', 'Carub.0003s1083' => 'cru', 'Carub.0003s2995' => 'cru', 'Carub.0004s1792' => 'cru', 'Carub.0005s1899' => 'cru', 'Carub.0005s1900' => 'cru', 'Carub.0006s0500' => 'cru', 'Carub.0006s2858' => 'cru', 'Ca_00553_v3' => 'car', 'Ca_09021_v3' => 'car', 'Ca_18266_v3' => 'car', 'Ca_24478_v3' => 'car', 'CBR_g30729' => 'cbr', 'CBR_g4880' => 'cbr', 'CBR_g52331' => 'cbr', 'CBR_g6495' => 'cbr', 'Cc00_g15510' => 'ccan', 'Cc00_g27970' => 'ccan', 'Cc04_g17000' => 'ccan', 'Cc09_g09440' => 'ccan', 'Cc10_g09070' => 'ccan', 'CDE02G0538' => 'cde', 'CDE03G0005' => 'cde', 'CDE04G1910' => 'cde', 'CDE06G2732' => 'cde', 'CDE07G1949' => 'cde', 'CDE08G0614' => 'cde', 'Cfa008100' => 'cfa', 'Cfa016634' => 'cfa', 'Ciclev10012191m.g' => 'ccl', 'Ciclev10013022m.g' => 'ccl', 'Ciclev10020574m.g' => 'ccl', 'Ciclev10026940m.g' => 'ccl', 'CiPaw.03G016500' => 'cil', 'CiPaw.09G016400' => 'cil', 'CiPaw.09G125000' => 'cil', 'CiPaw.10G092600' => 'cil', 'CiPaw.13G134400' => 'cil', 'CiPaw.14G098800' => 'cil', 'ClCG10G018760' => 'cla', 'ClCG10G018780' => 'cla', 'ClCG11G008910' => 'cla', 'COL.COLO4_24587' => 'col', 'COL.COLO4_29686' => 'col', 'COL.COLO4_31090' => 'col', 'COL.COLO4_34023' => 'col', 'Cpa.g.sc104.103' => 'cpa', 'Cpa.g.sc104.104' => 'cpa', 'Cpa.g.sc21.65' => 'cpa', 'Cpa.g.sc21.83' => 'cpa', 'Cre06.g259700' => 'cre', 'Cre08.g384600' => 'cre', 'Cre08.g384800' => 'cre', 'Cre11.g480150' => 'cre', 'CsaV3_1G032670' => 'csa', 'CsaV3_2G033140' => 'csa', 'CsaV3_3G037450' => 'csa', 'CsaV3_3G037470' => 'csa', 'CsaV3_3G037480' => 'csa', 'CSS0001740' => 'camsi', 'CSS0002465' => 'camsi', 'CSS0004636' => 'camsi', 'CSS0006942' => 'camsi', 'CSS0012012' => 'camsi', 'CSS0013615' => 'camsi', 'CSS0019016' => 'camsi', 'CSS0022752' => 'camsi', 'CSS0032096' => 'camsi', 'CSS0034293' => 'camsi', 'DCAR_007758' => 'dca', 'DCAR_007759' => 'dca', 'DCAR_014005' => 'dca', 'Dinv01246' => 'din', 'Dinv09399' => 'din', 'Dinv12388' => 'din', 'Dinv21177' => 'din', 'Dinv30731' => 'din', 'Dinv31711' => 'din', 'Dinv32267' => 'din', 'Duzib093G0309' => 'dzi', 'Duzib093G1999' => 'dzi', 'Duzib106G1648' => 'dzi', 'Duzib128G0033' => 'dzi', 'Duzib168G1115' => 'dzi', 'Duzib177G0312' => 'dzi', 'ECA232G4303' => 'eca', 'ECA236G1463' => 'eca', 'ECA240G0704' => 'eca', 'ECA246G3037' => 'eca', 'ECA246G4716' => 'eca', 'ECA248G1081' => 'eca', 'EL10Ac1g01707' => 'bvu', 'EL10Ac1g01876' => 'bvu', 'EL10Ac7g16887' => 'bvu', 'EL10Ac7g16888' => 'bvu', 'EL10Ac7g17792' => 'bvu', 'Eucgr.A02641' => 'egr', 'Eucgr.D00301' => 'egr', 'Eucgr.D02508' => 'egr', 'Eucgr.F02972' => 'egr', 'Eucgr.K02561' => 'egr', 'Eucgr.K02563' => 'egr', 'FAN02G2567' => 'fan', 'FAN02G4086' => 'fan', 'FAN05G0749' => 'fan', 'FAN05G4422' => 'fan', 'FAN09G4537' => 'fan', 'FAN11G2930' => 'fan', 'FAN13G0779' => 'fan', 'FAN14G2011' => 'fan', 'FAN14G5518' => 'fan', 'FAN16G0758' => 'fan', 'FAN18G0128' => 'fan', 'FAN18G3413' => 'fan', 'FAN21G3336' => 'fan', 'FAN25G2509' => 'fan', 'FvH4_3g05730' => 'fve', 'FvH4_5g32660' => 'fve', 'FvH4_5g33210' => 'fve', 'FvH4_6g19310' => 'fve', 'FvH4_6g19320' => 'fve', 'Glyma.01G231600' => 'gma', 'Glyma.03G197700' => 'gma', 'Glyma.03G241100' => 'gma', 'Glyma.03G241300' => 'gma', 'Glyma.11G014500' => 'gma', 'Glyma.13G217200' => 'gma', 'Glyma.15G095300' => 'gma', 'Glyma.19G195600' => 'gma', 'Glyma.19G238600' => 'gma', 'Glyma.19G238800' => 'gma', 'Gohir.A01G137734' => 'ghi', 'Gohir.A01G137800' => 'ghi', 'Gohir.A03G101300' => 'ghi', 'Gohir.A04G068900' => 'ghi', 'Gohir.A08G005900' => 'ghi', 'Gohir.A08G047650' => 'ghi', 'Gohir.A09G141000' => 'ghi', 'Gohir.A11G319000' => 'ghi', 'Gohir.A13G116900' => 'ghi', 'Gohir.D01G127500' => 'ghi', 'Gohir.D04G097600' => 'ghi', 'Gohir.D04G097700' => 'ghi', 'Gohir.D08G016200' => 'ghi', 'Gohir.D09G133800' => 'ghi', 'Gohir.D11G338166' => 'ghi', 'Gohir.D13G120200' => 'ghi', 'Gorai.002G158100' => 'gra', 'Gorai.004G010500' => 'gra', 'Gorai.006G153200' => 'gra', 'Gorai.007G368100' => 'gra', 'Gorai.009G400200' => 'gra', 'Gorai.009G400400' => 'gra', 'Gorai.013G134500' => 'gra', 'GSVIVG01007527001' => 'vvi', 'GSVIVG01033877001' => 'vvi', 'GSVIVG01033878001' => 'vvi', 'GSVIVG01036096001' => 'vvi', 'GSVIVG01036396001' => 'vvi', 'HanXRQChr01g0029851' => 'han', 'HanXRQChr05g0133021' => 'han', 'HanXRQChr05g0133031' => 'han', 'HanXRQChr05g0133041' => 'han', 'HanXRQChr06g0163851' => 'han', 'HanXRQChr09g0252071' => 'han', 'HanXRQChr09g0263011' => 'han', 'HanXRQChr10g0304091' => 'han', 'HanXRQChr11g0326371' => 'han', 'HanXRQChr11g0349751' => 'han', 'HanXRQChr12g0374041' => 'han', 'HanXRQChr12g0378721' => 'han', 'HanXRQChr14g0436281' => 'han', 'HanXRQChr16g0505041' => 'han', 'HanXRQChr17g0562811' => 'han', 'Haze_05582' => 'cav', 'Haze_13936' => 'cav', 'Haze_19641' => 'cav', 'Haze_23358' => 'cav', 'Haze_27436' => 'cav', 'Hma1.2p1_0286F.1_g114110' => 'hma', 'Hma1.2p1_0442F.1_g153990' => 'hma', 'Hma1.2p1_0820F.1_g223990' => 'hma', 'HPP92_005472' => 'vpl', 'HPP92_009042' => 'vpl', 'HPP92_012684' => 'vpl', 'HPP92_012703' => 'vpl', 'HPP92_025139' => 'vpl', 'HPP92_025140' => 'vpl', 'HPP92_026082' => 'vpl', 'HPP92_026083' => 'vpl', 'Hund02269' => 'sun', 'Hund03930' => 'sun', 'Hund03934' => 'sun', 'Hund19906' => 'sun', 'Lalb_Chr05g0211421' => 'lal', 'Lalb_Chr06g0171851' => 'lal', 'Lalb_Chr07g0188581' => 'lal', 'Lalb_Chr12g0208961' => 'lal', 'Lalb_Chr13g0292261' => 'lal', 'Lalb_Chr15g0086911' => 'lal', 'Lalb_Chr18g0055561' => 'lal', 'Lalb_Chr20g0111611' => 'lal', 'Lalb_Chr20g0118021' => 'lal', 'Lj1A1186T63' => 'lonja', 'Lj1g0015565' => 'lja', 'Lj2A141T60' => 'lonja', 'Lj2A141T61' => 'lonja', 'Lj2A141T62' => 'lonja', 'Lj2A306T71' => 'lonja', 'Lj4g0025873' => 'lja', 'Lj5g0006152' => 'lja', 'Lj6g0007389' => 'lja', 'Lj9A699G51' => 'lonja', 'LjContig00222g0015412' => 'lja', 'Lsat_1_v5_gn_4_133140' => 'lsa', 'Lsat_1_v5_gn_6_117460' => 'lsa', 'Lsat_1_v5_gn_6_117480' => 'lsa', 'Lsat_1_v5_gn_6_69320' => 'lsa', 'Lsat_1_v5_gn_8_74921' => 'lsa', 'Lsat_1_v5_gn_8_74941' => 'lsa', 'Manes.02G207800' => 'mes', 'Manes.04G002200' => 'mes', 'Manes.08G027500' => 'mes', 'Manes.09G053300' => 'mes', 'Manes.15G121200' => 'mes', 'Manes.17G069700' => 'mes', 'Mapoly0008s0132' => 'mpo', 'Mapoly0012s0116' => 'mpo', 'Mapoly0057s0050' => 'mpo', 'Mapoly0062s0062' => 'mpo', 'MBI05_g12093_MAGBIO' => 'mbi', 'MBI06_g15296_MAGBIO' => 'mbi', 'MBI06_g21933_MAGBIO' => 'mbi', 'MBI15_g18499_MAGBIO' => 'mbi', 'MBI18_g09610_MAGBIO' => 'mbi', 'MBI19_g32714_MAGBIO' => 'mbi', 'MCO01G146' => 'mco', 'MCO10G240' => 'mco', 'MCO16G400' => 'mco', 'MD05G1284900' => 'mdo', 'MD08G1213900' => 'mdo', 'MD08G1214000' => 'mdo', 'MD08G1214300' => 'mdo', 'MD10G1263300' => 'mdo', 'MD12G1028700' => 'mdo', 'MD12G1028900' => 'mdo', 'MD14G1028900' => 'mdo', 'MD14G1029100' => 'mdo', 'MD15G1397200' => 'mdo', 'Medtr2g019670' => 'mtr', 'Medtr4g096790' => 'mtr', 'Medtr7g105100' => 'mtr', 'MELO3C000513.2' => 'cme', 'MELO3C002715.2' => 'cme', 'MELO3C008085.2' => 'cme', 'MELO3C009489.2' => 'cme', 'MELO3C009490.2' => 'cme', 'MELO3C009491.2' => 'cme', 'MELO3C010405.2' => 'cme', 'Migut.C01362' => 'egut', 'Migut.J01010' => 'egut', 'Migut.J01011' => 'egut', 'Migut.J01012' => 'egut', 'Migut.L01798' => 'egut', 'MSTRG.11335' => 'ama', 'MSTRG.19275' => 'ama', 'MSTRG.25494' => 'ama', 'MSTRG.5863' => 'ama', 'MSTRG.5864' => 'ama', 'Nitab4.5_0001755g0020' => 'nta', 'Nitab4.5_0001875g0070' => 'nta', 'Nitab4.5_0001933g0110' => 'nta', 'Nitab4.5_0001933g0120' => 'nta', 'Nitab4.5_0002158g0200' => 'nta', 'Nitab4.5_0002654g0090' => 'nta', 'Nitab4.5_0003404g0010' => 'nta', 'Nitab4.5_0003510g0110' => 'nta', 'Nitab4.5_0004023g0010' => 'nta', 'Nitab4.5_0008328g0010' => 'nta', 'Nn3g18188' => 'nnu', 'Nn4g24102' => 'nnu', 'Nn4g24467' => 'nnu', 'Nn5g27883' => 'nnu', 'Nn5g28829' => 'nnu', 'Oeu013903.1' => 'oeu', 'Oeu017688.1' => 'oeu', 'Oeu025666.1' => 'oeu', 'Oeu025667.1' => 'oeu', 'Oeu058558.1' => 'oeu', 'Os01g0862000' => 'osa', 'Os01g0885600' => 'osa', 'Os02g0162500' => 'osa', 'Os02g0534800' => 'osa', 'Os04g0413600' => 'osa', 'Peaxi162Scf00069g00079' => 'pax', 'Peaxi162Scf00096g00714' => 'pax', 'Peaxi162Scf00096g00824' => 'pax', 'Peaxi162Scf00146g00084' => 'pax', 'Peaxi162Scf00961g00038' => 'pax', 'PGR004G2382' => 'pgr', 'PGR004G2393' => 'pgr', 'PGR042G1357' => 'pgr', 'PGR102G2087' => 'pgr', 'PGR142G0101' => 'pgr', 'PGSC0003DMG400008865' => 'stu', 'PGSC0003DMG400021158' => 'stu', 'PGSC0003DMG400028161' => 'stu', 'PGSC0003DMG400028162' => 'stu', 'Phvul.001G191800' => 'pvu', 'Phvul.002G035500' => 'pvu', 'Phvul.006G095400' => 'pvu', 'Phvul.006G163500' => 'pvu', 'Phvul.006G163600' => 'pvu', 'Potri.001G218700' => 'ptr', 'Potri.004G131800' => 'ptr', 'Potri.009G019400' => 'ptr', 'Potri.011G080500' => 'ptr', 'Potri.016G076550' => 'ptr', 'Potri.016G076601' => 'ptr', 'Potri.016G077066' => 'ptr', 'Potri.019G074600' => 'ptr', 'Pp3c15_22240' => 'ppa', 'Pp3c4_11150' => 'ppa', 'Pp3c9_110' => 'ppa', 'PRCOL_00003039' => 'pco', 'PRCOL_00003177' => 'pco', 'PRCOL_00006434' => 'pco', 'Prupe.1G546000' => 'ppe', 'Prupe.4G079500' => 'ppe', 'Prupe.6G133500' => 'ppe', 'Prupe.7G102600' => 'ppe', 'Prupe.7G102700' => 'ppe', 'Psat1g190120' => 'psa', 'Psat2g186760' => 'psa', 'Psat3g031600' => 'psa', 'Psat7g090080' => 'psa', 'PSO017G1915' => 'pso', 'PSO017G6211' => 'pso', 'PSO170G0001' => 'pso', 'PSO339G0894' => 'pso', 'PSO339G2568' => 'pso', 'PSO339G5669' => 'pso', 'PSO384G2511' => 'pso', 'PSO478G3177' => 'pso', 'PSO801G0110' => 'pso', 'PSO801G0646' => 'pso', 'QL01p012041' => 'qlo', 'QL05p058545' => 'qlo', 'QL07p038365' => 'qlo', 'QL07p038367' => 'qlo', 'QL07p038371' => 'qlo', 'QL09p003678' => 'qlo', 'RcHm_v2.0_Chr3g0474551' => 'rch', 'RcHm_v2.0_Chr3g0474561' => 'rch', 'RcHm_v2.0_Chr5g0013891' => 'rch', 'RcHm_v2.0_Chr5g0013901' => 'rch', 'RcHm_v2.0_Chr5g0013941' => 'rch', 'RcHm_v2.0_Chr7g0231591' => 'rch', 'Rhsim02G0173700' => 'rsi', 'Rhsim12G0054400' => 'rsi', 'Rhsim12G0054500' => 'rsi', 'Sabra04G0086000' => 'sbr', 'Sabra09G0012700' => 'sbr', 'Sabra15G0089600' => 'sbr', 'Sabra15G0089800' => 'sbr', 'Sabra15G0089900' => 'sbr', 'Sabra16G0079300' => 'sbr', 'Sabra16G0081900' => 'sbr', 'Sabra16G0125500' => 'sbr', 'Sabra19G0085300' => 'sbr', 'SalBow3G2323' => 'sbo', 'SalBow3G4487' => 'sbo', 'SalBow6G5610' => 'sbo', 'SalBow7G1915' => 'sbo', 'Sc02g0000390' => 'sci', 'Sc02g0000400' => 'sci', 'Sc06g0008720' => 'sci', 'Sc10g0009040' => 'sci', 'Sc12g0004570' => 'sci', 'Sc20g0006370' => 'sci', 'Sed0000922' => 'sed', 'Sed0001123' => 'sed', 'Sed0006868' => 'sed', 'Sed0019995' => 'sed', 'Sed0021965' => 'sed', 'Sed0023657' => 'sed', 'Sed0026479' => 'sed', 'SEGI_13028' => 'sgi', 'SEGI_17242' => 'sgi', 'SEGI_24848' => 'sgi', 'SEGI_24911' => 'sgi', 'SGA_v2.0_scaffold184G39982' => 'sas', 'SGA_v2.0_scaffold31G12896' => 'sas', 'SGA_v2.0_scaffold35G14045' => 'sas', 'SHI03841' => 'shi', 'SHI40524' => 'shi', 'SHI41290' => 'shi', 'SMO116G0199' => 'smo', 'SMO339G0076' => 'smo', 'SMO351G0469' => 'smo', 'Solyc02g070570.4' => 'sly', 'Solyc05g026217.1' => 'sly', 'Solyc06g064640.3' => 'sly', 'Solyc09g010100.3' => 'sly', 'Solyc10g083270.3' => 'sly', 'Solyc10g083280.4' => 'sly', 'Sopen02g019660' => 'spe', 'Sopen05g022440' => 'spe', 'Sopen06g023120' => 'spe', 'Sopen09g004840' => 'spe', 'Sopen10g032750' => 'spe', 'Sopen10g032760' => 'spe', 'Sp3g09750' => 'spa', 'Sp4g18390' => 'spa', 'Sp5g09720' => 'spa', 'Sp5g09730' => 'spa', 'Sp6g07390' => 'spa', 'Sp6g36780' => 'spa', 'TAR369G0498' => 'tar', 'TAR381G0923' => 'tar', 'TAR623G0214' => 'tar', 'TAR623G0924' => 'tar', 'TAR623G0930' => 'tar', 'TAR623G1205' => 'tar', 'TAR629G3336' => 'tar', 'TAR633G1070' => 'tar', 'THA.LOC104799755' => 'tha', 'THA.LOC104804685' => 'tha', 'THA.LOC104809969' => 'tha', 'THA.LOC104815868' => 'tha', 'THA.LOC104816593' => 'tha', 'THA.LOC104826819' => 'tha', 'Thecc.05G093600' => 'tca', 'Thecc.05G093800' => 'tca', 'Thecc.06G151900' => 'tca', 'Thecc.08G174600' => 'tca', 'Thecc.09G280400' => 'tca', 'Thecc.K0002900' => 'tca', 'Thhalv10010527m.g' => 'esa', 'Thhalv10010797m.g' => 'esa', 'Thhalv10014925m.g' => 'esa', 'Thhalv10017372m.g' => 'esa', 'Thhalv10021700m.g' => 'esa', 'Thhalv10028731m.g' => 'esa', 'TPR.G23341' => 'tpr', 'TPR.G35515' => 'tpr', 'TPR.G37881' => 'tpr', 'TPR.G39793' => 'tpr', 'TPR.G40666' => 'tpr', 'TPR.G4907' => 'tpr', 'TWI09G0432' => 'twi', 'TWI18G0505' => 'twi', 'TWI53G0435' => 'twi', 'TWI73G0423' => 'twi', 'TWI74G1320' => 'twi', 'TWI74G1597' => 'twi', 'unitig_22.g5129' => 'ugi', 'unitig_26.g9255' => 'ugi', 'unitig_37.g13083' => 'ugi', 'unitig_699.g19304' => 'ugi', 'unitig_749.g14302' => 'ugi', 'vmacro06601' => 'vma', 'vmacro07131' => 'vma', 'vmacro07445' => 'vma', 'vmacro11036' => 'vma', 'vmacro22087' => 'vma', 'VMungo0251G3576' => 'vmu', 'VMungo0540G1999' => 'vmu', 'VMungo0540G2028' => 'vmu', 'VMungo1215G3055' => 'vmu', 'VMungo1309G3099' => 'vmu', 'VMungo1383G1894' => 'vmu', 'Zm00001eb145490' => 'zma', 'Zm00001eb147060' => 'zma', 'Zm00001eb181430' => 'zma', 'Zm00001eb225190' => 'zma', 'Zm00001eb273640' => 'zma', 'Zm00001eb273650' => 'zma', 'Zm00001eb273660' => 'zma', 'Zm00001eb386940' => 'zma' ) $gf_id = 'HOM05D000972' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000972' ) $data_identifier = 'HOM05D000972' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 3, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 3, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386940' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1